PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG318900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 421aa    MW: 45978.3 Da    PI: 12.2165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG318900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-14134185155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++Y+k+L+
  Pavir.6KG318900.1.p 134 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YVQRGDQASIIGGAINYVKELE 185
                          79****************************...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.22E-15132189No hitNo description
Gene3DG3DSA:4.10.280.101.5E-14132189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.31133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-18133205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-12134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MALEAVVFSE ELFGSWAMAA APGGGGWSWG DQGENEHGGA VERVMDLEGG AAAYWEVGAN  60
SSALMMQGAD HQEPDGISLS APPLPENGGG GGNNAAAAGG AGFSQEVAVP PPPAGRRKRR  120
RTRSVKNREE VESQRMTHIA VERNRRKQMN EYLAALRSLM PPSYVQRGDQ ASIIGGAINY  180
VKELEQLLQS LEARKPRPPP GPVPRRRRLR RRRRGGALRG LLHLPAALHE RRRRPLPRHR  240
ERATRRRRGT EQRRRGRRQQ RRRRRRRRLG LAAVVGGGRG GDHGGEPREP EAAVPAAPAA  300
AAAPCRRAAG PPPHRAAPQR HQRRPPHGPL LPQPQGAYLP TTLPRRHLSP PSPRPAGLGF  360
RARRALSGTT PPNSPVSMFS MKPATWGQRQ AVVYEHYVAV ELVDRASGRA RHCLLMYPSS  420
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120RKRRR
2116121RKRRRT
3134145RMTHIAVERNRR
4252267RRRGRRQQRRRRRRRR
5252268RRRGRRQQRRRRRRRRL
6253268RRGRRQQRRRRRRRRL
7256263RRQQRRRR
8257266RQQRRRRRRR
9259265QRRRRRR
10260267RRRRRRRR
11261267RRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076267e-88AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588617e-88HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.18e-33bHLH family protein